Publications

The Australian Centre for Ancient DNA's world-class research is published in various scientific journals.

We invite you to browse our publicationswhich highlight the many scientific discoveries by our researchers and collaborators. ACAD members are marked in bold.

Year Title Authors Publication
2024 Rebecca Anne MacRoberts, Marco Liberato, Xavier Roca-Rada, Maria João Valente, Claudia Relvado, Teresa Matos Fernandes, Cristina Barrocas Dias, Bastien Llamas, Hermínia Vasconcelos Vilar, Bernd R Schöne, Sara Ribeiro, José Francisco Santos, João C Teixeira, Anne-France Maurer Plos one
2024

Roberta Davidson, Xavier Roca-Rada, Shyamsundar Ravishankar, Leonard Taufik, Christian Haarkötter, Evelyn Collen, Peter Webb, Matthew P Williams, M Irfan Mahmud, Erlin Novita Idje Djami, Gludhug A Purnomo...oão C Teixeira, Raymond Tobler, Lars Fehren-Schmitz, Bastien Llamas bioRxiv
2024 Hemmamuthé Goudiaby, Xavier Roca-Rada, Kalina Kassdjikova, Lars Fehren-Schmitz, Bastien Llamas Bulletins et mémoires de la Société d’Anthropologie de Paris
2024 Adam Benjamin Rohrlach, Maïté Rivollat, Patxuka de-Miguel-Ibáñez, Ulla Moilanen, Anne-Mari Liira, João C Teixeira, Xavier Roca-Rada, Javier Armendáriz-Martija, Kamen Boyadzhiev, Yavor Boyadzhiev, Bastien Llamas...Wolfgang Haak, Kay Prüfer Nature Communications
2023 July A Pilowsky, Stuart C Brown, Bastien Llamas, Ayla L van Loenen, Rafał Kowalczyk, Emilia Hofman-Kamińska, Ninna H Manaseryan, Viorelia Rusu, Matija Križnar, Carsten Rahbek, Damien A Fordham Proceedings of the Royal Society B
2023 Andre LM Reis, Melissa Rapadas, Jillian M Hammond, Hasindu Gamaarachchi, Igor Stevanovski, Meutia Ayuputeri Kumaheri, Sanjog R Chintalaphani, Duminda SB Dissanayake, Owen M Siggs, Alex W Hewitt, Bastien Llamas...Hardip R Patel, Ira W Deveson Nature
2023 Roberta Davidson, Matthew P Williams, Xavier Roca‐Rada, Kalina Kassadjikova, Raymond Tobler, Lars Fehren‐Schmitz, Bastien Llamas Molecular Ecology Resources
2023 Neerjah Skantharajah, Shakuntala Baichoo, Tiffany F Boughtwood, Esmeralda Casas-Silva, Subhashini Chandrasekharan, Sanjay M Dave, Khalid A Fakhro, Aida B Falcon de Vargas, Sylvia S Gayle, Vivek K Gupta, Rachele Hendricks-Sturrup, Ashley E Hobb, Stephanie Li, Bastien Llamas... Manuel Corpas Cell Genomics
2023 Bastien Llamas, Xavier Roca-Rada Science
2023 Divon Mordechai Lan, Daniel ST Hughes, Bastien Llamas bioRxiv

2023

 Nathan Deliveyne, Jeremy J Austin, Phillip Cassey Wildlife Research
2023 Sean Tomlinson, Mark Lomolino, Jamie Wood, Atholl Anderson, Stuart Brown, Sean Haythorne, George Perry, Janet Wilmshurst, Jeremy Austin, Damien Fordham Research Square
2023 Dan Nana Osei Bonsu, Denice Higgins, Jeremy J Austin Science & Justice
2023 Dan Nana Osei Bonsu, Denice Higgins, Claire Simon, Julianne M Henry, Jeremy J Austin Electrophoresis
2023 Dan Nana Osei Bonsu, Denice Higgins, Claire Simon, Corey S Goodwin, Julianne M Henry, Jeremy J Austin Journal of Forensic Sciences
2023 Ashleigh E Sharrad, Patrick Reis-Santos, Jeremy Austin, Bronwyn M Gillanders Food Control
2023 Felicia Bardan, Denice Higgins, Jeremy J Austin Forensic Science International: Genetics
2023 Jessica Stanhope, Jeremy J Austin, Emily Skelly, Philip Weinstein Restoration Ecology
2023 Lauren White, Frederik Saltre, Corey Bradshaw, Jeremy Austin Book: Thylacine: The History, Ecology and Loss of the Tasmanian Tiger
2023 Nathan Deliveyne, Jennifer M Young, Jeremy J Austin, Phillip Cassey Neobiota
2023 Sean Tomlinson, Mark Lomolino, Sean Haythorne, Atholl Anderson, Jeremy Austin, Stuart C Brown, George Perry, Janet Wilmshurst, Jamie Wood, Damien A Fordham bioRxiv
2023 Leonard Taufik, João C Teixeira, Bastien Llamas, Herawati Sudoyo, Raymond Tobler, Gludhug A Purnomo Genes
2022 Dawn A Lewis, Rebecca Simpson, Azure Hermes, Alex Brown, Bastien Llamas Molecular Ecology Resources
2022 Gina L Guzzo, Murthy N Mittinty, Bastien Llamas, Jane M Andrews, Laura S Weyrich Microorganisms
2022 Xavier Roca-Rada, Sofia Tereso, Adam B Rohrlach, André Brito, Matthew P Williams, Cláudia Umbelino, Francisco Curate, Ira W Deveson, Yassine Souilmi, António Amorim, Pedro C Carvalho, Bastien Llamas, João C Teixeira The Lancet
2022 Evelyn Jane Collen, Angad Singh Johar, João C Teixeira, Bastien Llamas Frontiers in Genetics
2022 Divon Mordechai Lan, Bastien Llamas bioRxiv
2022 Divon Mordechai Lan, Gludhug Purnomo, Raymond Tobler, Yassine Souilmi, Bastien Llamas bioRxiv
2021 Adrien Oliva, Raymond Tobler, Bastien Llamas, Yassine Souilmi Ecology and Evolution
2021 Songül Alpaslan-Roodenberg, David Anthony, Hiba Babiker, Eszter Bánffy, Thomas Booth, Patricia Capone, Arati Deshpande-Mukherjee, Stefanie Eisenmann, Lars Fehren-Schmitz, Michael Frachetti, Ricardo Fujita, Catherine J Frieman, Qiaomei Fu, Victoria Gibbon, Wolfgang Haak, Mateja Hajdinjak, Kerstin P Hofmann, Brian Holguin, Takeshi Inomata, Hideaki Kanzawa-Kiriyama, William Keegan, Janet Kelso, Johannes Krause, Ganesan Kumaresan, Chapurukha Kusimba, Sibel Kusimba, Carles Lalueza-Fox, Bastien Llamas... Muhammad Zahir Nature
2021 Arthur Kocher, Luka Papac, Rodrigo Barquera, Felix M Key, Maria A Spyrou...Ken Massy, Marcello Mannino, Vyacheslav Moiseyev Science
2021 Adrien Oliva, Raymond Tobler, Alan Cooper, Bastien Llamas, Yassine Souilmi Briefings in Bioinformatics
2021 Divon Lan, Ray Tobler, Yassine Souilmi, Bastien Llamas Bioinformatics
2021 Gludhug A Purnomo, Kieren J Mitchell, Sue O’Connor, Shimona Kealy, Leonard Taufik, Sophie Schiller, Adam Rohrlach, Alan Cooper, Bastien Llamas, Herawati Sudoyo, João C Teixeira, Raymond Tobler Genes
2021 Xavier Roca-Rada, Gustavo Politis, Pablo G Messineo, Nahuel Scheifler, Clara Scabuzzo, Mariela González, Kelly M Harkins, David Reich, Yassine Souilmi, João C Teixeira, Bastien Llamas, Lars Fehren-Schmitz iScience
2021 Corey JA Bradshaw, Kasih Norman, Sean Ulm, Alan N Williams, Chris Clarkson, Joël Chadœuf, Sam C Lin, Zenobia Jacobs, Richard G Roberts, Michael I Bird, Laura S Weyrich, Simon G Haberle, Sue O’connor, Bastien Llamas, Tim J Cohen, Tobias Friedrich, Peter Veth, Matthew Leavesley, Frédérik Saltré Nature Communications
2021 Jiří Macháček, Robert Nedoma, Petr Dresler, Ilektra Schulz, Elias Lagonik, Stephen M Johnson, Ludmila Kaňáková, Alena Slámová, Bastien Llamas, Daniel Wegmann, Zuzana Hofmanová Journal of Archaeological Science
2021 Roberta Davidson, Lars Fehren-Schmitz, Bastien Llamas Genes
2020 Ambrecht L, Herrando‐Pérez S, Eisenhofer R, Gustaaf M Hallegraeff, Christopher JS Bolch, Cooper A. Molecular Ecology Resources
2020 Barquera R, Collen E, Di D, Buhler S, Teixeira J, Llamas B, Manuel Nunes J, Sanchez‐Maza A. HLA
2020 Bonsu DOM, Higgins D, Austin JJ. Science & Justice
2020 Bover P, Mitchell KJ, Torres‐Roig E, Llamas B, Thomson VA,Alcover JA, Agustí J,Cooper A, Joan Pons. Journal of Zoological Systematics and Evolutionary Research
2020 Fenderson LE, Kovach AI, Llamas B. Molecular Ecology
2019 Gower G, Fenderson LE, Salis AT, Helgen KM, van Loenen AL, Heiniger H, Hofman-Kamińska E, Kowalczyk R, Mitchell KJ,Llamas B, Cooper A. PNAS
2020 Herrera MB, Kraitsek S, Alcalde JA, Quiroz D, Revelo H, Alvarez LA, Rosario MF, Thomson V, Jianlin H, Austin JJ, Gongora J. Royal Society Open Science
2020 Lan D, Tobler R, Souilmi Y, Llamas B. Bioinformatics
2020 Liu Y, Weyrich LS, Llamas B. Molecular Biology and Evolution
2020 Llamas B, Roca Rada S, Collen E. The Biochemist
2020 Mudge C, Dallwitz R,Llamas B, Austin JJ Frontiers in Ecology and Evolution
2020 Paul M Oliver, Holly Heiniger, Andrew F Hugall, Leo Joseph, Kieren J Mitchell. Biology Letters
2020 . Roca-Rada X, Souilmi Y, Teixeira JC,Llamas B Genes
2020 Selway CA, Eisenhofer R, Weyrich LS. The Journal of Pathology: Clinical Research
2020 Sheng G, Hu J, Tong H,Llamas B, Yuan J, Hou X, Chen S, Xiao B, Lai X BMC Evolutionary Biology
2020 Tobler T, Johar A, Huber C, Souilmi Y. arXIV preprint arXIV:2004.03224
2019 Armbrecht LH,Coolen MJL, Lejzerowicz F, George SC, Negandhi K, Suzuki Y, Young J, Foster NR, Armand LK,Cooper A, Ostrowski M, Focardi A, Stat M, Moreau JW,Weyrich LS. Earth Science Reviews
2019 Boast AP,Chapman B, Herrera MB, Worthy TH, Scofield RP, Tennyson AJD, Houde P, Bunce M,Cooper A, Mitchell KJ. Diversity
2019 Bover P, Llamas B, Mitchell KJ, Thomson VA, Alcover JA, Lalueza-Fox C,Cooper A, Pons J. Quaternary Science Reviews
2019 Carmen Gomez Cabrera M del, Young JM, Roff G, Staples T, Ortiz JC, Pandolfi JM,Cooper A. Molecular Ecology
2019 Cole TL, Ksepka DT,Mitchell KJ, Tennyson AJD, Thomas DB, Pan H, Zhang G, Rawlence NJ, Wood JR,Bover P, Bouzat JL,Cooper A, Fiddaman S, Hart T, Miller G, Ryan PG, Shepherd L, Wilmshurst JM, Waters JM. Molecular Biology and Evolution
2019 Eisenhofer R, Anderson A, Dobney K,Cooper A, Weyrich LS. Journal of Island and Coastal Archaeology
2019 Gower G, Fenderson LE, Salis AT, Helgen KM,van Loenen AL, Heiniger H,Hofman-Kamińska E, Kowalczyk R,Mitchell KJ, Llamas B, Cooper A. PNAS
2019 Jackson SM, Fleming PJs, Eldridge MDb, Ingleby S, Flannery T, Johnson RN, Cooper SJb,Mitchell KJ, Souilmi Y, Cooper A, Wilson DE, Helgen KM. Zootaxa
2019 Kowal E,Llamas B Journal of Anthropological Sciences
2019 Legrand TPRA,Wynne JW,Weyrich LS,Oxley APA. Reviews in Aquaculture
2019 Llamas B, Narzisi G, Schneider V...Busby B F1000Research
2019 Richards SM, Mitchell KJ, Tobler R, Cooper A. Peer J Preprints
2019 Richards SM, Hovhannisyan N, Gilliham M, Ingram J, Skadhauge B,Heiniger H, Llamas B, Mitchell KJ,Meachen J, Fincher JB,Austin JJ, Cooper A. PloS One
2019 Shaw JLA, Weyrich LS,Hallegraeff G,Cooper A. Molecular Ecology
2019 Weyrich LW, Farrer AG, Eisenhofer R, Arriola LA, Young J, Selway CA, Handsley‐Davis M, Adler CJ, Breen J, Cooper A. Molecular Ecology Resources
2019 Young JM, Higgins D, JJ Austin. Geological Society,London, Special Publications
2018

Coprolites reveal ecological interactions lost with the extinction of New Zealand birds

 Boast AP,Weyrich LS,Wood RJ, Metcalf JL, Knight R,Cooper A. PNAS
2018 Bardan F, Higgins D, Austin JJ. Forensic Science International Genetics
2018 Bolton PE, Rollins LA, Brazill-Boast J, Maute KL, Legge S,Austin JJ, Griffith SC. Conservation Genetics
2018 Bover P, Mitchell KJ, Llamas B, Rofes J, Thomson VA, Cuenca-Bescós G, Alcover JA,Cooper A,Pons J. Molecular Phylogenetics and Evolution
2018 Bover P, Llamas B,Thomson VA, Pons J,Cooper A,Mitchell KJ. Molecular Phylogenetics and Evolution
2018 Ancient DNA tracks the mainland extinction and island survival of the Tasmanian devil Brüniche–Olsen A, Jones ME, Burridge CP, Murchison EP, Holland BR,Austin JJ. Journal of Biogeography
2018 Cascini M,Mitchell KJ, Cooper A, Phillips MJ. Systematic Biology
2018 Contamination in low microbial biomass microbiome studies: Issues and recommendations EisenhoferE, Minich JJ, Marotz C,Cooper A,Knight R,Weyrich LS. Trends in Microbiology
2018 EisenhoferE,Weyrich LS. Peer J Preprints
2018 Farrer AG, Bekvalac J, Redfern R, Gully N, Dobney K, Cooper A, Weyrich LS. bioRxiv p343889
2018 Feigin CY, Newton AH, Doronina L, Schmitz J, Hipsley CA,Mitchell KJ, Gower G,Llamas B, Soubrier J, Heider TN, Menzies BR,Cooper A, O’Neill RJ, Pask AJ. Nature Ecology & Evolution
2018 Goodwin C,Higgins D,Tobe SS,Austin JJ, Wotherspoon A, Gahan ME, McNevin D. Forensic Science, Medicine and Pathology
2018 Consequences of colonialism: A microbioal perspective to contemporary Indigenous health. 167(2) pp 423-437 Skelly, E, Kapellas K,Cooper A, Weyrich LS. American Journal of Physical Anthropology
2018 Ancient DNA from Giant Panda (Ailuropoda melanoleuca) of South-Western China Reveals Genetic Diversity Loss during the Holocene.9(4), 198. Sheng G-L, Barlow A, Cooper A, Hou X-D, Ji X-P, Jablonski NG, Zhong B-J, Liu H, Flynn LJ, Yuan J-X, Wang LR, Basler N, Westbury MV, Hofreiter M and Lai X-L. Genes
2018 Thomson VA,Mitchell KJ, Eberhard R, Dortch J,Austin JJ,Cooper A. Biology Letters
2018 Early Last interglacial ocean warming drove substantial ice mass loss from Antarctica Turney C, Fogwill C, Golledge N,...Weyrich LS, Young J, Cooper A. EarthArXiv
2018 Laboratory contamination over time during low-biomass sample analysis Weyrich LS, Farrer AG,Eisenhofer R, Arriola LA, Young J, Selway CA, Handsley-Davis M,Adler C, Breen J,Cooper A. BioRxivp460212
2018 White LC, Moseby KE, Thomson VA, Donnellan SCAustin JJ. Biological Conservation
2018 White LC, Saltre F, Bradshaw CJA,Austin JJ. Biology Letters
2018 White LC, Mitchell KJ, Austin JJ. Journal of Biogeography
2017

A case for realigning species limits in the southern Australian shipbirds long recognised as the Western Whipbird (Psophodes nigrogularis)

 Burbidge AH, Joseph L, Toon A,White LC, McGuire A,Austin JJ. Emu-Austral Ornithology
2017 Cruz‐Dávalos DI,Llamas B,Gaunitz C, Fages A, Gamba C,Soubrier J,...Cooper A, Willerslev E, Orlando L. Molecular Ecology Resources
2017 Czechowski P, Clarke L,Cooper A, Stevens M. DNA Barcodes
2017 Czechowski P,Clarke LJ,Cooper A, Stevens M. Antarctic Science
2017 . Eisenhofer R, Anderson A, Dobney K,Cooper A, Weyrich LS. Journal of Island and Coastal Archaeology
2017 Eisenhofer R, Cooper A, Weyrich LS. FEMS Microbiology Ecology
2017 Fehren-Scmitz L, Harkins KM,Llamas B. Quaternary International
2017 Fogwill CJ, Turney CSM, Golledge NR,... Cooper A. Scientific Reports
2017 Frisia S,Weyrich LS,Hellstrom J, Borsato A, Golledge NR, Anesio AM, Bajo P, Drysdale RN, Augustinus PC, Rivard C,Cooper A. Nature Communications
2017 Kowal E,Llamas B, Tishkoff S. Nature
2017 Kozakiewicz CP, Carver S,Austin JJ, Shephard JM, Burridge CP. Avian Biology
2017 Lipson M, Szécsényi-Nagy A, Mallick S, ... Reich D. Nature
2017 Llamas B, Valverde G,Fehren-Schmitz L,Weyrich LS Cooper, Haak W. STAR: Science & Technology of Archaeological Research
2017 Llamas B,Harkins KM, Fehren-Schmitz. Quaternary International
2017 Human evolution: A tale from ancient genomes Llamas B.Willerslev E, Orlando E. The Royal Society
2017 Mills JG, Weinstein P. Gellie NJC,Weyrich LS, Lowe AJ, Breed M. Restoration Ecology
2017 Murphy SA,Austin JJ,Murphy RK, Silcock J. Joseph L, Garnett ST, Leseberg NP, Watson JEM, Burbidge AH. Emu - Austral Ornithology1
2017 Murphy SA, Silcock J, Murphy R, Reid J, Austin JJ. Austral Ecology
2017 Nagle N, Ballantyne KN... Genographic Consortium. Journal of Human Genetics
2017 Onar V, Soubrier J, Toker NY, van Loenen A, Llamas B, Siddiq AB, Pasicka E, Tokarska M. Mammal Research
2017 Perry T,van Loenen AL, Heiniger H,Lee C, Gongora J,Cooper A, Mitchell KJ. Molecular Phylogenetics and Evolution
2017 Rabanus-Wallace MT, Wooller MJ, Zazula GD, Shute E, Jahren H, Kosintsev P, Burns JA,Breen J,Llamas B, Cooper A. Nature Ecology & Evolution
2017 Rabanus-Wallace MT, Wooller MJ, Zazula GD, Shute E, Jahren AH, Kosintsev P, Burns JA,Breen J, Llamas B, Cooper A. Nature Ecology & Evolution
2017 Scofield RP,Mitchell KJ, Wood JR, De Pietri VL, Jarvie S,Llamas B, Cooper A. Molecular Phylogenetics and Evolution
2017 Shaw JLA, Weyrich, Cooper A. Marine and Freshwater Research
2017 Tobler R,Rohrlach A,Soubrier J, Bover P, Llamas B, ...Richards SM, Mitchell RJ, Kowal E, Stephen JR, Williams L,Haak W, Cooper A. Nature
2017 Van Den Elsen LWJ, Poyntz HC,Weyrich LS, Young W,Forbes‐Blom EE. Clinical & translational immunology
2017 Weyrich LS, Duchene S,Soubrier J,Arriola L, Llamas B, BreenJ,...Dobney K,Cooper A. Nature
2017 Young J. Austin JJ, Weyrich LS. FEMS Microbiology Ecology
2016

Abdul-Aziz, Cooper A, Weyrich LS. Frontiers in microbiology.
2016 Brüniche-Olsen A,Austin JJ,Jones ME, Holland BR, Burridge CP. PloS One
2016 Cruz‐Dávalos DI,Llamas B,Gaunitz D, Fages A, Gamba C,Soubrier J, Librado P, Seguin‐Orlando A, Pruvost M, Alfarhan AH, Alquraishi SA, Al‐Rasheid KAS, Scheu A, Beneke N, Ludwig A,Cooper A, Willerslev E, Orlando L. Molecular Ecology Resources
2016 Czechowski P, White, D, Clarke L, McKay A,Cooper A, Stevens M. Royal Society Open Science
2016 Eisenhofer R, Cooper A, Weyrich LS. Microbiology Resource Announcements
2016 Haouchar D, Pacioni C, Haile J, McDowell MC, Baynes A, Phillips MJ,Austin JJ, Pope LC, Bunce M. Biodiversity and Conservation
2016 Nucleic Acid sample preparation from teeth/dental remains Higgins D, Austin JJ. Sample Preparation Techniques for Soil, Plant and Animal Samples
2016 Joseph L, Boussès P, Wilke T,Austin JJ. Emu
2016 Kearns AM, Joseph L,White LC, Austin JJ,Baker C, Driskell AC, Malloy JF, Omland KE. Conservation Genetics
2016 Ancient mitochondrial DNA provides high-resolution timescale of the peopling of the Americas Llamas B*, Fehren-Schmitz L*,Valverde G,Soubrier J,...Ho SYW,Cooper A,Haak W. Science Advances
2016 Metcalf JL, Turney C, Barnett R,...Austin JJ, Cooper A. Science Advances
2016 Mitchell KM,Bray SC, Bover P, Soibelzon L, Schubert BW, Prevosti F, Prieto A, Martin F,Austin JJ, Cooper A. Biology Letters
2016 Schiffels S,HaakW, Paajanen P,Llamas B, Popescu E, Loe L, Clarke R, Lyons A, Mortimer R, Sayer D, Tyler-SmithC, Cooper A, Durbin R. Nature Communications
2016 Scofield RP,Mitchell KJ, Wood JR,De Pietri VL, Jarvie S,Llamas B, Cooper A. Molecular Phylogenetics and Evolution
2016 Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system Shaw JLA, Clarke LJ,Wedderburn SD, Barnes TC,Weyrich LS, Cooper A. Biological Conversation
2016 Soubrier J, Gower G[...] Shapiro B,Cooper A. Nature Communications
2016 Valverde G, Romero MIB, Espinoza IF,Cooper A, Fehren-Schmitz L,Llamas B, Haak W. PloS One
2016 High-throughput sequencing of trace quantities of soil provides reproducible and discriminative fungal DNA profiles Young JM, Weyrich LS, Cooper A. Journal of Forensic Sciences
2015 Cooper A, Turney C, Hughen KA, Brook BW, McDonald HG, Bradshaw CJA. Science
2015 Clarke LJ, Weyrich LS, Cooper A. Molecular Ecology
2015 Cooper A,Weyrich LS, Farrer AG. Pathology-Journal of the RCPA
2015 A Re-appraisal of the early andean human remains from Iauricocha in Peru Fehren-Schmitz L,Llamas B, Lindauer S,...Cooper A, Reich D,Haak W. PloS One
2015 Fehren-Schmitz L, Skoglund P,Llamas B, Lindauer S, Tomasto E, Kuzminsky S, Rohland N, Nordenfelt S, Mallick S,Cooper A,Patterson N,Haak W, Reich D. American Journal of Physical Anthropology
2015 Haak W, Lazaridis I, Patterson N,...Cooper A,Werner Alt K & Reich D. Nature
2015 Higgins D, Rohrlach AB, Kaidonis J, Townsend G, Austin JJ. PloS One
2015 Llamas B,Brotherton P,Mitchell KJ, Templeton JEL,Thomson VA, Metcalf JL, Armstrong KN, Kasper M, Richards SM, Camens AB, Lee MSY,Cooper, A. Molecular Biology and Evolution
2015 Mathieson I, Lazaridis I, Rohland N, Mallick S, Llamas B, Pickrell J, Meller H, Rojo Guerra MA, Krause J, Anthony D, Brown D, Lalueza Fox C,Cooper A, Alt KW,Haak W, Patterson N, Reich D. bioRxiv
2015 Mathieson I,Haak W, Patterson N, Mallick S,Llamas B, Rohland N, Harney E, Nordenfeldt S, Stewardson K, Lazaridis I, Pickrell J,Cooper A, Brandt G, Nicklisch N, Meller H, Alt KW, Reich D. American Journal of Physical Anthropology
2015 Reduced reactions volumes and increased Taq DNA polymerase concentration improve STR profiling outcomes from a real-world low template DNA source: telogen hairs McNevin D, Edson J, Robertson J,Austin JJ. Forensic Science, Medicine and Pathology
2015 Rawlence NJ, Perry GLW, Smith IWG, Scofield RP, Tennyson AJD, Matisoo-Smith EA, Boessenkool S,Austin JJ, Waters JM. Quaternary Science Reviews
2015 Saltré F, Brook BW, Rodríguez-Rey M,Cooper A,ohnson CN, Turney CSM, Bradshaw CJA. Quaternary Science Reviews
2015 Amplification of TruSeq ancient DNA libraries with AccuPrime Pfx: consequences on nucleotide misincorporation and methylation patterns Seguin-Orlando A, Hoover CA, Vasiliev SK, Ovodov ND, Shapiro B,Cooper A,Rubin EM, Willerslev E, Orlando L. Science & Technology of Archaeological Research
2015 Using amplicon sequencing to characterize and monitor bacterial diversity in drinking water distribution systems Shaw JLA, Monis P,Weyrich LS, Sawade E, Drikas M,Cooper A. Applied and Environmental Microbiology
2015 The skin microbiome: Associations between altered microbial communities and disease Weyrich LS, Dixit,Farrer AG, Cooper A. Australasian Journal of Dermatology
2015 Young JM, Weyrich LS, Breen J,MacDonald LM,Cooper A. Forensic Science International
2015 Young JM, Weyrich LS, Clarke LJ,Cooper A. Forensic Science, Medicine and Pathology
2014

Austin JJ,Oliver L, Nankervis D, Brown WE, Gardner MG, Burridge CP. Australian Journal of Zoology
2014 Brandt G. Szecseryi-Nagy AS, Roth CR, Alt KW,Haak W. Journal of Human Evolution
2014 Brüniche-Olsen A, Jones ME,Austin JJ, Burridge CP, Holland BR. Biology Letters
2014 Coutinho A,Valverde G,Fehren-Schmitz L,Cooper A, Barreto Romero MI, Flores Espinoza I,Llamas B, Haak W. PLoS One
2014 ..Vol 14(6). Clark, LJ, Soubrier J, Weyrich LS, CooperA. Molecular Ecology Resources
2014 Clarke LJ, Czechowski P, Soubrier J, Stevens MI,Cooper A. Molecular Ecology Resources
2014 From cheek swabs to consensus sequences: an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes Clarke AC, Prost S, Stanton JAL, White WT, Kaplan ME, Matisoo-Smith EA,The Genographic Consortium . BMC genomics
2014 Der Sarkissian C, Brotherton P, Balanovsky O, Templeton J,Llamas B,Soubrier J,Moiseyev V, Khartanovich V,Cooper A, Haak W, The Genographic Consortium PLoS ONE
2014 Climate change underlies global demographic, genetic, and cultural transitions in pre-Columbian southern Peru Fehren-Schmitz L.,Haak W,Mächtle B, Masch F,Llamas B, Tomasto Cagigao E, Sossna V, Schittek K, Isla Cuadrado, Eitel B, Reindel M. PNAS
2014 Fehren-Schmitz L,Llamas B, Tomasto-Cagigao E,Haak W. Boletin Arqueologia PUCP[Spanish].
2014 Higgins D, Kaidonis J, Townsend G,Austin JJ. Forensic Science Medicine and Pathology
2014 Kearns A,White L, Austin JJ, Omland K. Emu
2014 Mitchell K, Llamas B, Soubrier J,Rawlence NJ, Worthy TH, Wood J, Lee MSY,Cooper A. Science[For non subscribers to the journal, click,and]
2014 Mitchell KJ,Pratt RC, Watson LN, Gibb GC,Llamas B, Kasper M, Edson J, Hopwood B, Male D, Armstrong K, Meyer M, Hofreiter M,Austin JJ, Donnellan SC, Lee MSY, Phillips MJ,Cooper A. Molecular Biology and Evolution
2014 Mitchell KJ,Wood JR, Scofield PR,Llamas B,Cooper A. Molecular Phylogenetics and Evolution
2014 Using palaeoenvironmental DNA to reconstruct past environments: progress and prospects Rawlence NJ, Lowe DJ, Wood JR,Young JM,Churchman G, Huang YT,Cooper A. Journal of Quaternary Science
2014 Assessing the impact of water treatment on bacterial biofilms in drinking water distribution systems using high-throughput DNA sequencing Shaw JLA, Monis P, Fabris R, Ho L, Braun K, Drikas M,Cooper A. Chemosphere
2014 Sheng GL,Soubrier J,Liu JY, Werdelin L,Llamas B, Thomson VA, Tuke J, Wu LJ, Hou XD, Chen QJ, Lai XL,Cooper A. Molecular Ecology
2014 Thomson VA, Lebrasseur O,Austin JJ, Hunt TL, Burney DA, Denham T, USA.Rawlence NJ, Wood JR, Gongora J, Firdi LF, Linderhalm A, Dobney K, Larson G,Cooper A. Proceedings of the National Academy of Sciences
2014 Thomson VA, Lebrasseur O, Austin JJ, Hunt TL, Burney DA, Denham T, Nicolas JR, Wood JR, Gongora J, Fink LG, Linderholm A, Dobney K. Larson G, Cooper A. Proceedings of the National Academy of Sciences
2014 Young J, Rawlence N, Weyrich LS, and Cooper A. Science and Justice
2014 Forensic soil DNA analysis using high-throughput sequencing. A comparison of four molecular markers.Forensics Science International: Young JM, Weyrich LS, Cooper A. Genetics
2014 Young JM,Rawlence NJ,Weyrich LS, Cooper A. Science & Justice
2014 . Wadley JJ, Austin JJ,Fordham DA. Austral Ecology
2014 Wadley JJ, Austin JJ,Gardner, Fordham DA. Australian Journal of Zoology
2014 Weyrich L, Llamas B, and Cooper A. FEMS Microbiology Letters
2014 . Weyrich LS, Dobney K. Cooper A. Journal of Human Evolution
2014 White LC, Horsup A, Taylor AC,Austin JJ. Australian Journal of Zoology
2014 Wood JR,Mitchell KJ,Scofield RP, Tennyson AJD, Fidler AE, Wilmshurst JM,Llamas B,Cooper A. Zoological Journal of the Linnean Society
2013

Adler CJ,Dobney K,Weyrich LS,Kaidonis J, Walker AW,Haak W,Bradshaw CJA, Townsend G, Soltysiak A, Alt KW, Parkhill J andCooper A. Nature Genetics
2013 (Passeriformes: Maluridae:Amytornis) Austin JJ, Joseph L, Pedler LP, Black AB. Conservation Genetics
2013 Austin JJ, Soubrier J,Prevosti FJ, Prates L, Trejo V, Mena F,Cooper A. Nature Communications
2013 Y chromosome and mtDNA Genetics Reveal Significant Contrasts in Affinities of Modern Middle Eastern Populations with European and African Populations. Badro DA, Douaihy B, Haber M,...The Genographic Consortium. PLoS One
2013 Brandt G,Haak W, Adler CJ,...Cooper A, Alt KW, The Genographic Consortium. Science
2013 Brotherton P,Haak W,Templeton J, Brandt G,Soubrier J, Adler CJ, Richards SM, Der Sarkissian C,...Cooper A,The Genographic Consortium. Nature Communications
2013 Bruniche-Olsen A, Burridge CP,Austin JJ,ones ME. Biological Conservation
2013 ? Burridge CP, Brown WE,Wadley J, Nankervis DL, Olivier L, Gardner MG, Hull C, Barbour R andAustin JJ. Proceedings of The Royal Society
2013 Clarke LJ, Czechowski P, Soubrier J, Stevens MI,Cooper A. Molecular Ecology Resources
2013 Cooper Aand Stringer CB. Science
2013 Czechowski P, Sands CJ, Adams BJ, D'Haese CA, Gibson JAE, McInnes SJ, Stevens MI. Invertebrate Systematics
2013 Der Sarkissian C, Balanovsky O, Brandt G, Khartanovich V, Buzhilova A, Koshel S, Zaporozhchenko V, Gronenbom D, Moiseyev V, Kolpakov E, Shumkin V, Alt KW, Balanovska E,Cooper A, Haak Wand The Genographic Consortium. PloS Genetics
2013 Mitochondrial Genome Sequencing in Mesolithic North East Europe Unearths a New Sub-Clade within the Broadly Distributed Human Haplogroup C1 Der Sarkissian C,Brotherton P, Balanovsky O,Templeton JEL,Llamas B, Soubrier J, Moiseyev V, Khartanovich V,Cooper A, Haak W, the Genographic Consortium. PLoS One
2013 Johnson CN, Bradshaw CJA,Cooper A,Gillespie R, Brook BW. Quaternary International
2013 Higgins D, Austin JJ. Science and Justice
2013 Targeted sampling of cementum for recovery of nuclear DNA from human teeth and the impact of common decontamination measures Higgins D, Kaidonis J, Townsend G, Hughes T,Austin JJ. Investigative Genetics
2013 Lee MSY,Soubrier J,Edgecombe GD. Current Biology
2013 Mitchell KJ, Wood JR, Scofield RP,Llamas B,Cooper, A. Molecular Phylogenetics and Evolution
2013 Pavlova A, Amos JN, Joseph L, Loynes K,Austin JJ,Keogh JS, Stone GN, Nichols JA, Sunnucks P. Evolution
2013 Smith Kl, Hale JM, Gray L, Kearney M,Austin JJ,Parris KM, Melville J. Evolution
2013 Templeton JEl,Brotherton PM,Llamas B, Soubrier J, Haak W, Cooper A, and Austin JJ. Investigative Genetics
2013 Vilstrup JT, Seguin-Orlando A, Stiller M, Ginolhac A, Raghavan M, Nielsen SCA, Weinstock J, Froese D, Vasiliev SK, Ovodov ND, Clary J, Helgen KM, Fleischer RC,Cooper A, Shapiro B, Orlando L. PLoS One
2013 Wadley JJ, Austin JJand Fordham D. Wildlife Research
2013 ) Wood JR, Wilmshurst JM,Rawlence NJ, Boot K, Worthy TH, Kinsella JM,Cooper A. PloS One
2013 Wood JR, Wilmshurst JM, Richardson SJ, Rawlence NJ, Wagstaff SJ, Worthy TH,Cooper A. PNAS
2012

Bray SCE,Austin JJ,Metcalf JL,Østbye K, Østbye E, Lauritzen S-E, Aaris-Sørensen K, Valdiosera C,Adler CJ,Cooper A. Diversity and Distributions
2012 Behar DM, Harmant C, Manry J, van Oven M,Haak W, Martinez-Cruz B, Salaberria J, Oyharçabal B, Bauduer F, Comas D, Quintana-Murci L,Genographic Consortium. American Journal Human Genetics
2012 Robust estimates of extinction time in the geological record Bradshaw CJA,Cooper A,Turney CSM, and Brook BW. Quaternary Science Reviews
2012 Edson J, Brooks EM, McLaren C, Robertson J, McNevin D, Cooper A, Austin JJ. Forensic Science International: Genetics
2012 Man and megafauna in Tasmania: closing the gap Gillespie R, Camens AB, Worthy TH,Rawlence NJ,Reid C, Bertuch F, Levchenko V,Cooper A. Quaternary Science Reviews
2012 Haber M, Platt DE, Ashrafian Bonab M, ...The Genographic Consortium. PLoS One
2012 Structure and Fragmentation of growling grass frog metapopulations Hale JM, Heard GW, Smith KL, Parris JM,Austin JJ,Kearney M, Melville J. Conservation Genetics
2012 Javed A, Melé M, Pybus M,...The Genographic Consortium. Human Genetics
2012 Kang L, Lu Y, Wang C, Hu K, Chen F, Liu K, Li S, Jin L, Li H;The Genographic Consortium. American Human Genetics
2012 Llamas B,Holland ML,Chen K,Cropley JE,Cooper A,Suter CM. Plos One
2012 Lu Y, Wang C, Qin Z, Wen B, Farina SE, Jin L, Li H;The Genographic Consortium. Mitochondrial DNA
2012 Martínez-Cruz B, Harmant C, Platt DE,Haak W, Manry J, Ramos-Luis E, Soria-Hernanz DF, Bauduer F, Salaberria J, Oyharçabal B, Quintana-Murci L, Comas D; the Genographic Consortium. Molecular Biology and Evolution
2012 Metcalf J, Love SS, Kennedy C, Rogers K, McDonald D, Keepers K, Epp J,Cooper A,Austin J,Martin A. Molecular Ecology
2012 Low MHC diversity in the Tasmanian devil pre-dates European settlement and may explain susceptibility to disease epidemics Morris K,Austin JJ, Belov K. Biology Letters
2012 Molecular beacon immobolized within suspended core fibre for specific DNA detection Nguyen LV, Warren-Smith SC,Cooper A, Monro TM. Optics Express
2012 Rawlence N, Metcalf JL, Wood JR, Worthy TH,Austin JJ, Cooper A. Quaternary Science Reviews
2012 Rawlence NJ,Cooper A. Journal of the Royal Society of New Zealand.
2012 Soubrier J,Steel M. Lee M.Der Sarkissian C,Guindon S, Ho SYW,Cooper Aand The Genographic Consortium. Molecular Biology Evolution
2012 A lost link between a flightless parrot and a parasitic plant and the potential role of coprolites in conservation paleobiology Wood JR, Wilmshurst JM, Worthy TH, Holzapfel AS,Cooper A. Conservation Biology.
2012 High-Resolution Coproecology: Using Coprolites to Reconstruct the Habits and Habitats of New Zealand's Extinct Upland Moa (Megalapteryx didinus) Wood JR, Wilmshurst JM, Worthy TH,Cooper A. PLoS One
2012 First coprolite evidence for the diet ofAnomalopteryx didiformis, an extinct forest ratite from New Zealand Wood JR, Wilmshurst JM, Worthy TH,Cooper A. NZ J Ecology
2011

Survival and recovery of DNA from ancient teeth and bones.

 Adler CJ, Haak W,Donlon D,Cooper A, The Genographic Consortium. Journal of Archaeological Science
2011 Aplin KP, Hitoshi S, Alejandro A,...Rowe K,Cooper A. PLoS One
2011 Parallel evolution of genes and languages in the Caucasus region Balanovsky O, Dibirova K, Dybo A,...The Genographic Consortium. Molecular Biology Evolution
2011 A New Dolphin Species, the Burrunan Dolphin Tursiops australis sp. nov., Endemic to Southern Australian Coastal Waters. Charlton-Robb K, Gershwin, LA, Thompson R,Austin JJ,Owen K, McKenchnie, S. PLoS One
2011 Late-Quaternary biogeographic scenarios for the brown bear (Ursus arctos), a wild mammal model species Davidson J, Ho SYW,Bray S,Korsten M, Vulla E, Hindrikson M, Ostbye K, Ostbye E, Lauritzen S-E,Austin JJ,Cooper A, Saarma U. Quaternary Science Reviews
2011 Influences of history, geography, and religion on genetic structure: The Maronites in Lebanon.19: 334-340. Haber M, Platt DE, Badro DA,...The Genographic Consortium. European Journal of Human Genetics
2011 Microsatellite loci for the endangered growling grass frog (litoria raniformis), with cross amplification in other Australian frog species Hale JM, Heard GW, Smith KL, Blacket MJ,Austin JJ, Melville J. Conservation Genetics Resources
2011 Higgins D.,Kaidonis J.,Austin JJ,Townsend G., James H., Huighes, T. Australian Journal of Forensic Sciences
2011 Time dependent rates of molecular evolution Ho SYW, Lanfear R, Bromham L, Phillips MJ,Soubrier J,Rodrigo AG,Cooper A. Molecular Ecology
2011 Kemper C, Cooper SJB, Medlin GC, Adams M, Stemmer D, Saint KM, McDowell MC,Austin JJ. Australian Journal of Zoology
2011 Lari, M., Rizzi, E., Mona, S., Corti, G., Catalano, G., Chen, K., Vernesi, C., Larson, G., Boscato, P., De Bellis, G.,Cooper, A.,Caramelli, D., Bertorelle, G. BMC Evolutionary Biology
2011 Discovery of lost diversity of paternal horse lineages using ancient DNA Lippold S, Knapp M, Kuznetsova T, Leonard JA, Benecke N, Ludwig A, Rasmussen M,Cooper A, Weinstock J, Willerslev E, Shapiro B and Hofreiter M. Nature Communications
2011 Species-specific responses of Late Quaternary megafauna to climate and humans Lorenzen ED, Nogues-Bravo D, Orlando L, ...,Cooper A, Hofreiter M, Sher A, Shapiro B, Rahbek C, Willerslev E. Nature
2011 Phylogeography of the pademelons (Macropodidae:Thylogale) in New Guinea reflects both geological and climatic events during the Plio-Pleistocence Macqueen P,Goldizen AW,Austin JJ, Seddon JM. Journal of Biogeography
2011 Murphy SA, Joseph L, Burbidge AH,Austin JJ. Conservation Genetics
2011 Using DNA from museum specimens to preserve the integrity of Evolutionary Significant Unit boundaries in threatened species Paplinska JZ, Taggart DA, Corrigan T, Eldridge MDB,Austin JJ. Biological Conservation
2011 Smith KL, Hale JM,Austin JJ,Melville J. Conservation Genetics Resources
2011 Toon A,Austin JJ,Dolman G, Pedler L, Joseph LG. Molecular Phylogenetics and Evolution
2011 Sporormiellaas a proxy for non-mammalian herbivores in island ecosystems Wood JR, Wilmshurst JM, Worthy TH,Cooper A. Quaternary Science Reviews
2011 A Biochemical-Biophysical Study of Hemoglobins from Woolly Mammoth, Asian Elephant, and Humans Yuan Y, Shen TJ, Gupta P, Ho N, Simplaceanu V, Tam T-C, Hofreiter M,Cooper A, Campbell K, Ho, C. Biochemistry
2010 Sexual dimorphism in deciduous crown traits of a European derived Australian sample Adler CJ,Donlon D. Forensic Science International
2010 Preferential access to genetic information from endogenous ancient DNA and quantitative SNP-typing from ancient hominin samples via SPEX Brotherton P, Sanchez JJ,Cooper A, Endicott P. Nucleic Acids Research
2010 Assessing morphological and DNA-based diet analysis techniques in a generalist predator, the arrow squidNototodarus gouldi Braley M, Goldsworthy SD, Page B, Steer M,Austin JJ. Molecular Ecology Resources
2010 Substitutions in woolly mammoth hemoglobin confer biochemical properties adaptive for cold tolerance Campbell KL, Roberts JEE, Watson LN, Stetefeld J, Sloan AM, Signore AV, Howatt JW, Tame JRH, Rohland N, Shen T-J,Austin JJ,Hofreiter M, Ho C, Weber RE,Cooper A. Nature Genetics
2010 Haak W, Balanovsky O, Sanchez JJ, Koshel S, Zaporozhchenko V,Adler CJ, Der Sarkissian CSI, Brandt G, Schwarz C, Nicklisch N, Dresely V, Fritsch B, Balanovska E, Villems R, Meller H, Alt KW,Cooper A, The Genographic Consortium. PLoS Biology
2010 Phylogenetics of the pademelons (Macropodidae: Thylogale) and historical biogeography of the Australo-Papuan region. Macqueen P, Seddon JM,Austin JJ, Hamilton S, Goldizen AQ. Molecular Phylogenetics and Evolution
2010 A New Method to Reconstruct Recombination Events at a Genomic Scale. Melé M, Javed A, Pybus M, Calafell F, Parida L, Bertranpetit J,The Genographic Consortium. PLoS Computational Biology
2010 Qin Z, Yang Y, Kang L, Yan S, Cho K, Cai X, Lu Y, Zheng H, Zhu D, Fei D, Li S, Jin L, Li H.The Genographic Consortium. American Journal Physical Anthropology
2010 Worthy, T.H., S.J. Hand, J.M.T. Nguyen, A.J.D. Tennyson, J.P. Worthy, R.P. Scofield W.E. Boles & M. Archer. Journal of Vertebrate Paleontology
2010 Zhadanov SI, Dulik MC, Markley M, Jennings GW, Gaieski JB, Elias G, Schurr TG; TheGenographic Project Consortium. American Journal of Physical Anthropology