成人大片

• Biography/ Background

  2009 – 2012    PhD in Molecular Biology and Evolution
  Australian Centre for Ancient DNA - School of Earth and Environmental Sciences - The 成人大片, Australia
  Research project: “What ‘molecular’ time is it? – Use of ancient DNA to refine estimates of molecular timescales”
  Supervised by Alan Cooper, Simon Ho (University of Sydney), Wolfgang Haak and Mike Lee
   
  2006 – 2008    Master’s degree in Functional Genomics and Oncology
  University Claude Bernard Lyon1, France
  Research project: “Supermatrix assemblies to study the phylogeny of Actinopterygii (ray-finned fishes)”
  Bibliographic dissertation: “Supermatrices and Supertrees: What solutions for Phylogenomics”
  Supervised by Christophe Douady, Groundwater Hydrobiology and Ecology team of “Laboratoire d’Ecologie des Hydrosystèmes Souterrains”, UMR CNRS 5023, University Claude Bernard Lyon1, France and Manolo Gouy, Bioinformatics and Evolutionary Genomics team of “Laboratoire Biométrie et Biologie Evolutive”, UMR5558, University Claude Bernard Lyon1, France

  2004 – 2006    Bachelor’s degree in Biology of Organisms and Populations
  University Claude Bernard Lyon1, France
  Research project: “Genetic analysis of domestication during the Neolithic period (Chronobos project).
  Supervised by Sandrine Hughes and Ludovic Orlando, Paleogenetic team of the “Institut de Génomique Fonctionnelle de Lyon”, UMR CNRS 5161, Ecole Normale supérieure de Lyon, France

  ---

   

   

• Research Interests

  As a member of the Australian Centre of Ancient DNA, Julien uses bioinformatic tools to analyse the genomes of both living and extinct species from next generation sequencing data. Using the bison as a model organism, with DNA data from specimens up to 50 ky old, he is currently studying how large mammals respond to environmental variation and adapt to periods of rapid climate change. This involves identifying genomic signatures associated with important evolutionary processes like speciation, population fragmentation, and population decline preceding extinction.

• Publications

  On Google Scholar

  ---

  Peer-reviewd articles

   

  1.     Weyrich LS, Duchene S, Soubrier J, Arriola L, Llamas B, Breen J, Morris AG, Alt KW, Caramelli D, Dresely V, Farrell M, Farrer AG, Francken M, Gully N, Haak W, Hardy K, Harvati K, Held P, Holmes EC, Kaidonis J, Lalueza-Fox C, de la Rasilla M, Rosas A, Semal P, Soltysiak A, Townsend G, Usai D, Wahl J, Huson DH, Dobney K, Alan Cooper A

  Reconstructing Neandertal behavior, diet, and disease using ancient DNA from dental calculus

  Nature (2017) 10.1038/nature21674

   

  2.     Tobler R*, Rohrlach A*, Soubrier J, Bover P, Llamas B, Tuke J, Bean N, Abdullah-Highfold A, Agius S, O’Donoghue A, O’Loughlin I, Sutton P, Zilio F, Walshe K, Williams AN, Turney C, Williams M, Mitchell RJ, Kowal E, Stephen JR, Williams L, Haak H, Cooper A

  Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia

  Nature (2017) 10.1038/nature21416 [*equally contributed]

   

  3.     Onar V, Soubrier J, Toker NY, van Loenen A, Llamas B, Siddiq AB, Pasicka E, Tokarska M

  Mammal Research (2017) 10.1007/s13364-016-0299-4

   

  4.     Soubrier J*, Gower G*, Chen K, Richards SM, Llamas B, Mitchell KJ, Ho SYW, Kosintsev P, Lee MSY, Baryshnikov G, Bollongino R, Bover P, Burger J, Chivall D, Crégut-Bonnoure E, Decker JE, Doronichev VB, Douka K, Fordham DA, Fontana F, Fritz C, Glimmerveen J, Golovanova LV, Groves C, Guerreschi A, Haak W, Higham T, Hofman-Kami脜聞ska E, Immel A, Julien MA, Krause J, Krotova O, Langbein F, Larson G, Rohrlach A, Scheu A, Schnabel RD, Taylor JF, Tokarska M, Tosello G, vanderPlicht J, vanLoenen A, Vigne JD, Wooley O, Orlando L, Kowalczyk R, Shapiro B, Cooper A

  Nature Communications (2016) 10.1038/ncomms13158 [*equally contributed]

   

  5.     Cruz-Dávalos DI, Llamas B, Gaunitz C, Fages A, Gamba C, Soubrier J, Librado P, Seguin-Orlando A, Pruvost M, Alfarhan AH, Alquraishi SA, Khaled A. S. Al-Rasheid, Scheu A, Beneke N, Ludwig A, Cooper A, Willerslev E, Orlando L

  Experimental Conditions Improving in Solution Target Enrichment for Ancient DN

  Molecular Ecology Resources (2016) 10.1111/1755-0998.12595

   

  6.     Llamas B, Fehren-Schmitz, Valverde G, Soubrier J, Mallick S, Rohland N, Nordenfelt S, Valdiosera C, Richards SM, Rohrlach A, Barreto Romero MI, Flores Espinoza I, Tomasto Cagigao E, Watson Jiménez L, Makowski K, Leboreiro Reyna IS, Mansilla Lory J, Ballivián Torrez JA, Rivera MA, Burger RL, Constanza Ceruti M, Reinhard J, Wells RS, Politis G, Santoro CM, Standen VG, Smith C, Reich D, Ho SYW, Cooper A, Haak W

  Science Advances (2016) 10.1126/sciadv.1501385

   

  7.     Mitchell KJ, Llamas B, Soubrier J, Rawlence NJ, Worthy TH, Wood J, Lee MSY, Cooper A

  Science (2014) 10.1126/science.1251981

   

  8.     Clarke LJ, Soubrier J, Weyrich LS, CooperA

  Molecular Ecology Resources (2014) 10.1111/1755-0998.12265

   

  9.     Der Sarkissian C, Brotherton P, Balanovsky O, Templeton J, Llamas B, Soubrier J, Moiseyev V, Khartanovich V, Cooper A, Haak W, The Genographic Consortium

  PLoS ONE (2014) 10.1371/journal.pone.0087612

   

  10.  Sheng GL*, Soubrier J*, Liu JY, Werdelin L, Llamas B, Thomson VA, Tuke J, Wu LJ, Hou XD, Chen QJ, Lai XL, Cooper A

  Molecular Ecology (2013) 10.1111/mec.12576 [*equally contributed]

   

  

   

  11.  Templeton JEL, Brotherton PM, Llamas B, Soubrier J, Haak W, Cooper A, Austin JJ

  Investigative Genetics (2013) 10.1186/2041-2223-4-26

   

  12.  Lee MSY, Soubrier J, and Edgecombe GD

  Current Biology (2013) 10.1016/j.cub.2013.07.055

   

  13.  Clarke LJ, Czechowski P, Soubrier J, Stevens MI and Cooper A

  Molecular Ecology Resources (2013) 10.1111/1755-0998.12162

   

  14.  Brotherton P, Haak W, Templeton J, Brandt G, Soubrier J, Adler CJ, Richards SM, Der Sarkissian C, Ganslmeier R, Friederich S, Dresely V, van Oven M, Kenyon R, Van der Hoek M, Korlach J, Luong K, Ho SYW, Quintana-Murci L, Behar DM, Meller H, Alt KW, Cooper A and The Genographic Project

  Nature Communications (2013) 10.1038/ncomms2570

   

  15.  Austin J*, Soubrier J*, Prevosti FJ, Prates L, Trejo V, Mena F, and Cooper A

  Nature Communications (2013) 4:1552 [*equally contributed]

   

  16.  Soubrier J, Steel M, Lee M, Der Sarkissian C, Guindon S, Ho SYW, Cooper A and The Genographic Consortium

  Molecular Biology and Evolution (2012) 29:3345-3358

   

  17.  Ho SYW, Lanfear R, Bromham L, Phillips MJ, Soubrier J, Rodrigo AG and Cooper A

  Molecular Ecology (2011) 20:3087-3101

   

  18.  Aplin KP, Suzuki H, Chinen AA, Chesser RT, Ten Have J, Donnellan SC, Austin J, Frost A, Gonzalez JP, Herbreteau V, Catzeflis F, Soubrier J, Fang YP, Robins J, Matisoo-Smith E, Bastos AD, Maryanto I, Sinaga MH, Denys C, Van Den Bussche RA, Conroy C, Rowe K and Cooper A

  PLoS One (2011) 6:e26357

   

  ---

  Other publications

  1.     Miller, C, Franks, C, Breen, J, Weyrich, L, Soubrier, J, Llamas, B, Haak, W, Cooper, A

  Proceedings of eResearch Australasia 2016, 2015 / pp.27-1-27-3

Entry last updated: Tuesday, 29 Mar 2022

To link to this page, please use the following URL:  /directory/julien.soubrier